Aboul-Maaty NAF, Oraby HAS. 2019. Extraction of
high-quality genomic DNA from different plant
orders applying a modified CTAB-based method.
Bulletin of the National Research Centre 43:1-10.
Achenbach L, Brix H. 2014. Can differences in
salinity tolerance explain the distribution of four
genetically distinct lineages of Phragmites australis
in the Mississippi River Delta? Hydrobiologia 737:
5-23.
Arzanlou M, Groenewald JZ, Gams W, Braun U,
Shin HD, Crous PW. 2007. Phylogenetic and
morphotaxonomic revision of Ramichloridium and
allied genera. Studies in Mycology 58: 57-93.
Asgari B, Zare R, Payghami E. 2004.
Hyphomycetous fungal community of barley
phylloplane in East Azarbaijan province with
emphasis on new taxa for Iranian fungal flora.
Rostaniha 52: 171-198.
Atala C, Acuña‐Rodríguez IS, Torres‐Díaz C,
Molina‐Montenegro MA. 2022. Fungal endophytes
improve the performance of host plants but do not
eliminate the growth/defense trade‐off. New
Phytologist 235: 384-387.
Bamisile BS, Dash CK, Akutse KS, Keppanan R,
Wang L. 2018. Fungal endophytes: beyond
herbivore management. Frontiers in Microbiology
9: 544.
Baron NC, Rigobelo EC. 2022. Endophytic fungi: a
tool for plant growth promotion and sustainable
agriculture. Mycology 13: 39-55.
Bashyal BP, Burns AM, Liu MX, Paranagama PA,
Seliga CJ, Turbyville TJ, Gunatilaka AAL. 2006.
Discovery of small molecule bioactive agents from
endophytic fungi of the Sonoran Desert NZGA.
Research and Practice Series 13: 211-214.
Bills GF, González-Menéndez V, Martín J, Platas G,
Fournier J, Peršoh D, Stadler M. 2012. Hypoxylon
pulicicidum sp. nov.Ascomycota Xylariales a
pantropical insecticide-producing endophyte. PLoS
ONE 7: e46687.
Bonanno G, Giudice RL. 2010. Heavy metal
bioaccumulation by the organs of Phragmites
australis common reed and their potential use as
contamination indicators. Ecological Indicators 10:
639-645.
Breen JP. 1994. Acremonium endophyte interactions
with enhanced plant resistance to insects. Annual
Review of Entomology 39: 401-423.
Brem D, Leuchtmann A. 2001. Epichloë grass
endophytes increase herbivore resistance in the
woodland grass Brachypodium sylvaticum.
Oecologia 126: 522-530.
Busby PE, Ridout M, Newcombe G. 2016. Fungal
endophytes: modifiers of plant disease Plant.
Molecular Biology 90: 645-655.
Card S, Johnson L, Teasdale S, Caradus J. 2016.
Deciphering endophyte behaviour: the link
between endophyte biology and efficacious
biological control agents FEMS. Microbiology
Ecology 92: 1-19.
Cheplick GP, Faeth S, Faeth SH. 2009. Ecology and
evolution of the grass-endophyte symbiosis.
Oxford University Press, USA.
Clay K, Schardl C. 2002. Evolutionary origins and
ecological consequences of endophyte symbiosis
with grasses. The American Naturalist 160: 99-
127.
Farr DF, Rossman AY. 2021. Fungal databases US
National fungus collections ARS USDA
[Retrieved August 3, 2021] Available online at
https://ntars-gringov/ fungal databases/.
Fér T, Hroudova Z. 2009. Genetic diversity and
dispersal of Phragmites australis in a small river
system Aquatic Botany 90: 165-171.
Fisher PJ, Graf F, Petrini LE, Sutton BC, Wookey
PA. 1995. Fungal endophytes of Dryas octopetala
from a high arctic polar semidesert and from the
Swiss Alps. Mycologia 87: 319-323.
Harrington AH, del Olmo-Ruiz M, U’Ren JM, Garcia
K, Pignatta D, Wespe N, Arnold AE. 2019.
Coniochaeta endophytica sp. nov. a foliar
endophyte associated with healthy photosynthetic
tissue of Platycladus orientalis Cupressaceae. Plant
and Fungal Systematics 64: 65-79.
Hyde KD, Soytong K. 2008. The fungal endophyte
dilemma. Fungal Diversity 33: 163-173.
Ibrahim A, Tanney JB, Fei F, Seifert KA, Cutler GC,
Capretta A, Sumarah MW. 2020. Metabolomicguided discovery of cyclic nonribosomal peptides
from Xylaria ellisii sp. nov. a leaf and stem
endophyte of Vaccinium angustifolium. Scientific
Reports 10: 1-17.
Katoh K, Standley DM. 2013. MAFFT multiple
sequence alignment software version 7:
improvements in performance and usability.
Molecular Biology and Evolution 30: 772-780.
Katoh K, Rozewicki J, Yamada KD. 2019. MAFFT
online service: multiple sequence alignment
interactive sequence choice and visualization.
Briefings in Bioinformatics 20: 1160-1166.
Kipfer T, Moser B, Egli S, Wohlgemuth T, Ghazoul
J. 2011. Ectomycorrhiza succession patterns in
Pinus sylvestris forests after stand-replacing fire in
the Central Alps. Oecologia 167: 219-228.
Kowalski KP, Bacon C, Bickford W, Braun H, Clay
K, Leduc-Lapierre M, Wilcox DA. 2015.
Advancing the science of microbial symbiosis to
support invasive species management: a case study
on Phragmites in the Great Lakes. Frontiers in
Microbiology 6: 1-14.
Li HY, Shen M, Zhou ZP, Li T, Wei YL, Lin LB.
2012. Diversity and cold adaptation of endophytic
fungi from five dominant plant species collected
from the Baima Snow Mountain Southwest China.
Fungal Diversity 54: 79-86.
Liu AR, Xu T, Guo LD. 2007. Molecular and
morphological description of Pestalotiopsis
hainanensis sp. nov. a new endophyte from a
tropical region of China. Fungal Diversity 24: 23-
36.
Lombard L, Houbraken J, Decock C, Samson RA,
Meijer M, Réblová M, Crous PW. 2016. Generic
hyper-diversity in Stachybotriaceae. PersooniaMolecular Phylogeny and Evolution of Fungi 36:
156-246.
Mason EW, Ellis MB. 1953. British species of
Periconia. Mycological Papers 56: 104.
Meshram V, Kapoor N, Saxena S. 2013. Muscodor
kashayum sp. nov.–a new volatile anti-microbial
producing endophytic fungus. Mycology 44: 196-
204.
Meyerson LA, Cronin JT, Pyšek P. 2016. Phragmites
australis as a model organism for studying plant
invasions Biological Invasions 18: 2421-2431.
Noumeur SR, Teponno RB, Helaly SE, Wang XW,
Harzallah D, Houbraken J, Stadler M. 2020.
Diketopiperazines from Batnamyces globulariicola
gen. & sp. nov. Chaetomiaceae a fungus associated
with roots of the medicinal plant Globularia
alypum in Algeria. Mycological Progress 19: 589-
603.
Novas MV, Carmarán CC. 2008. Studies on diversity
of foliar fungal endophytes of naturalised trees
from Argentina with a description of Haplotrichum
minutissimum sp. nov. Flora-Morphology
Distribution Functional Ecology of Plants 203:
610-616.
Preethi K, Manon Mani V, Lavanya N. 2021.
Endophytic fungi: A potential source of bioactive
compounds for commercial and therapeutic
applications. In: Endophytes: Potential Source of
Compounds of Commercial and Therapeutic
Applications. (Patil RH, Maheshwari VL): 247-
272. Springer Press, Singapore.
Price MN, Dehal PS, Arkin AP. 2010. FastTree 2–
approximately maximum-likelihood trees for large
alignments. PloS One 53: e9490.
Quesada Moraga E. 2020. Entomopathogenic fungi as
endophytes: their broader contribution to IPM and
crop production Biocontrol Science and
Technology 30: 864-877.
Redman RS, Sheehan KB, Stout RG, Rodriguez RJ,
Henson JM. 2002. Thermotolerance generated by
plant/fungal symbiosis. Science 298: 1581-1581.
Rezakhani F, Khodaparast SA, Masigol H, RojaJimenez K, Grossart HP, Bakhshi M. 2019. A
preliminary report of aquatic hyphomycetes
isolated from Anzali lagoon Gilan province North
of Iran. Rostaniha 202: 123-143.
Rodriguez RJ, Henson J, Van Volkenburgh E, Hoy
M, Wright L, Beckwith F, Redman RS. 2008.
Stress tolerance in plants via habitat-adapted
symbiosis. The ISME Journal 2: 404-416.
Ronquist F, Teslenko M, Van Der Mark P, Ayres DL,
Darling A, Höhna S, Huelsenbeck JP. 2012.
MrBayes 32: efficient Bayesian phylogenetic
inference and model choice across a large model
space. Systematic Biology 61: 539-542.
Rosa LH, Vaz A, Caligiorne RB, Campolina S, Rosa
CA. 2009. Endophytic fungi associated with the
Antarctic grass Deschampsia antarctica
DesvPoaceae. Polar Biology 32: 161-167.
Salimi F, Alizadeh A, Mirzadi Gohari A, JavanNikkhah M. 2019. Endophytic fungus Radulidium
subulatum from Phragmites australis in Iran.
Mycologia Iranica 6: 41-47.
Schulz B, Boyle C, Draeger S, Römmert AK, Krohn
K. 2002. Endophytic fungi: a source of novel
biologically active secondary metabolites.
Mycological Research 106: 996-1004.
Silva RM, Oliveira RJ, Bezerra JD, Bezerra JL,
Souza-Motta CM, Silva GA. 2019. Bifusisporella
sorghi gen. et sp. nov. Magnaporthaceae to
accommodate an endophytic fungus from Brazil.
Mycological Progress 18: 847-854.
Singh A, Singh DK, Kharwar RN, White JF, Gond
SK. 2021. Fungal endophytes as efficient sources
of plant-derived bioactive compounds and their
prospective applications in natural product drug
discovery: Insights avenues and challenges.
Microorganisms 9: 197.
Soares MA, Li HY, Kowalski KP, Bergen M, Torres
MS, White JF. 2016. Evaluation of the functional
roles of fungal endophytes of Phragmites australis
from high saline and low saline habitats.
Biological Invasions 18: 2689-2702.
Stamatakis A. 2014. RAxML version 8: a tool for
phylogenetic analysis and post-analysis of large
phylogenies. Bioinformatics 30: 1312-1313.
Strobel GA. 2002. Rainforest endophytes and
bioactive products Critical Reviews in
Biotechnology 22: 315-333.
Suryanarayanan TS, Wittlinger SK, Faeth SH. 2005.
Endophytic fungi associated with cacti in Arizona.
Mycological Research 109: 635-639.
Tanney JB, Seifert KA. 2019. Tryblidiopsis magnesii
sp. nov. from Picea glauca in Eastern Canada.
Fungal Systematics and Evolution 4: 13-20.
Tao G, Liu ZY, Liu F, Gao YH, Cai L .2013.
Endophytic Colletotrichum species from Bletilla
ochracea Orchidaceae with descriptions of seven
new species. Fungal Diversity 61: 139-164.
Tutte J. 1969. Plant pathological methods: Fungi and
Bacteria. Burgess Publishing, USA.
Vega FE. 2018. The use of fungal entomopathogens
as endophytes in biological control: a review.
Mycologia 110: 4-30.
Verma VC, Gangwar M, Yashpal M, Nath G. 2013.
Anticestodal activity of endophytic Pestalotiopsis
sp. on protoscoleces of hydatid cyst Echinococcus
granulosus. BioMed Research International 2013:
308515.
Wang JW, Wu JH, Huang WY, Tan RX. 2006.
Laccase production by Monotospora sp. an
endophytic fungus in Cynodon dactylon.
Bioresource Technology 97: 786-789.
White TJ, Bruns T, Lee S, Taylor J. 1990.
Amplification and direct sequencing of fungal
ribosomal RNA genes for phylogenetics. In: PCR
protocols: a guide to methods and applications.
(Innis MA, Gelfand DH, Sninsky JJ, and White
TJ.): 315–322. Academic Press, USA.
Woudenberg JHC, Sandoval-Denis M, Houbraken J,
Seifert KA, Samson RA. 2017. Cephalotrichum
and related synnematous fungi with notes on
species from the built environment. Studies in
Mycology 87: 257-421.
Yadav G, Meena M. 2021. Bioprospecting of
endophytes in medicinal plants of Thar Desert: An
attractive resource for biopharmaceuticals.
Biotechnology Reports 30: e00629.
Yang EF, Phookamsak R, Jiang HB, Tibpromma S,
Bhat DJ, Karunarathna SC, Promputtha I. 2022.
Taxonomic reappraisal of Periconiaceae with the
description of three new Periconia species from
China. Journal of Fungi 8: 243.
Zhang CL, Liu SP, Lin FC, Kubicek CP, Druzhinina
IS. 2007. Trichoderma taxi sp. nov. an endophytic
fungus from Chinese yew Taxus mairei. FEMS
Microbiology Letters 270: 90-96.
Zheng H, Yu Z, Jiang X, Fang L, Qiao M. 2022.
Endophytic Colletotrichum species from aquatic
plants in southwest China. Journal of Fungi 81: 87-
115.
)